AG Algorithmen und Komplexität

We have written a user manual that provides explanations to all of JAguc's features. Download it here:

JAguc 2.0 user manual.

If you are more interested in the internal workings of JAguc, you might want to read the paper
M. E. Nebel, S. Wild, M. Holzhauser, L. Hüttenberger, R. Reitzig, M. Sperber, T. Stoeck, Journal of Bioinformatics and Computational Biology (2011) 9 (6): 749-773