AG Algorithmen und Komplexität

If you have used JAguc in your research, please send us an This email address is being protected from spambots. You need JavaScript enabled to view it. and let us know what you used it for and what you think about it. Any reference to JAguc should be made via this paper:

JAguc - a software package for environmental diversity analyses, M. E. Nebel, S. Wild, M. Holzhauser, L. Hüttenberger, R. Reitzig, M. Sperber, T. Stoeck, Journal of Bioinformatics and Computational Biology (2011) 9 (6): 749-773.

Where JAguc Has Been Used

  • A. Behnke, M. Engel,R. Christen, M. Nebel, R. R. Klein and T. Stoeck,
    Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions,
    Environmental Microbiology (2010) doi:10.1111/j.1462-2920.2010.02332.x.
  • W. Foissner, T. Stoeck,
    Cotterillia bromelicola nov. gen., nov. spec., a gonostomatid ciliate (Ciliophora, Hypotricha) from tank bromeliads (Bromeliaceae) with de novo originating dorsal kineties,
    Eur J Protistol. 2011 Jan;47(1):29-50. Epub 2010 Oct 23.
  • A. Stock, H.-W. Breiner, M. Pachiadaki, V. Edgcomb, S. Filker, V. La Cono, M. M. Yakimov and T. Stoeck,
    Microbial eukaryote life in the new hypersaline deep-sea basin Thetis,
    Extremophiles Volume 16, Number 1, 21-34, DOI: 10.1007/s00792-011-0401-4
  • M. Dunthorn, J. Klier, J. Bunge and T. Stoeck,
    Comparing the Hyper-Variable V4 and V9 Regions of the Small Subunit rDNA for Assessment of Ciliate Environmental Diversity,
    Journal of Eukaryotic Microbiology Volume 59, Issue 2, pages 185–187, March/April 2012
  • W. Foissner, K. W. Wolf, V. Yashchenko and T. Stoeck,
    Description of Leptopharynx bromelicola n. sp. and Characterization of the Genus Leptopharynx Mermod, 1914 (Protista, Ciliophora),
    Journal of Eukaryotic Microbiology Volume 58, Issue 2, pages 134–151, March/April 2011
  • V. P. Edgcomb, W. Orsib, H.-W. Breiner, A. Stock, S. Filker, M.M. Yakimov, T. Stoeck,
    Novel active kinetoplastids associated with hypersaline anoxic basins in the Eastern Mediterranean deep-sea,
    Deep Sea Research Part I: Oceanographic Research Papers Volume 58, Issue 10, October 2011, Pages 1040–1048
  • J. Otto,
    Placing short massively parallel sequence tags into a phylogenetic context a case study with ciliates,
    Master-Thesis at Department of Ecology and molecular Phylogenetics, University of Kaiserslautern
  • K. Palmer, C. Biasi and M. A. Horn,
    Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra,
    The ISME Journal , (1 December 2011) | doi:10.1038/ismej.2011.172
  • K. Palmer and M. A. Horn,
    Actinobacterial nitrate reducers and Proteobacterial denitrifiers are abundant in N2O metabolizing palsa peat,
    Applied and Environmental Microbiology, June 2012, doi: 10.1128/AEM.00810-12.
  • V. Edgcomb and T. Stoeck
    Massively Parallel Tag Sequencing Unveils the Complexity of Marine Protistan Communities in Oxygen-Depleted Habitats, in Tag-Based Next Generation Sequencing
    (eds M. Harbers and G. Kahl), Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany. doi: 10.1002/9783527644582.ch11
  • A. Stacheter, M. Noll, C. K. Lee, M. Selzer, B. Glowik, L. Ebertsch, R. Mertel, D. Schulz, N. Lampert, H. L. Drake and Steffen Kolb
    Methanol oxidation by temperate soils and environmental determinants of associated methylotrophs
    The ISME Journal , (20 December 2012), doi: 10.1038/ismej.2012.167